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Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical...more

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Latest Episodes

397: SciPhy: Bayesian phylogenetics for sequential genetic lineage tracing

Episode 397

June 20, 2026

397: SciPhy: Bayesian phylogenetics for sequential genetic lineage tracing

Seidel et al., Nature Communications - SciPhy is a BEAST2-integrated Bayesian framework that models sequential CRISPR‑based insertion edits to jointly infer time-scaled single-cell lineage...

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00:23:27

396: Physical homology recognition between DNA duplexes

Episode 396

June 18, 2026

396: Physical homology recognition between DNA duplexes

Stannard A et al., Proceedings of the National Academy of Sciences (PNAS) - This episode summarizes a PNAS study that uses a FRET-responsive DNA...

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00:23:26

395: Extended sequence context shapes mutational bias in Escherichia coli

Episode 395

June 18, 2026

395: Extended sequence context shapes mutational bias in Escherichia coli

Green R et al., PNAS - Collating >100,000 base-pair substitutions from 32 mutation-accumulation experiments, this study shows that sequence context well beyond adjacent bases...

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00:22:43

394: Benchmarking LLMs for cfRNA biomarker discovery

Episode 394

June 17, 2026

394: Benchmarking LLMs for cfRNA biomarker discovery

Gaudio HA et al., Nature Communications - This episode examines a systematic benchmark of six commercial large language models applied to plasma cell-free RNA...

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00:22:34

393: Hidden Resistance: tNGS Reveals Rifampicin and Bedaquiline Resistance in Eswatini

Episode 393

June 17, 2026

393: Hidden Resistance: tNGS Reveals Rifampicin and Bedaquiline Resistance in Eswatini

Vambe D et al., Nature Communications - This study reports the programmatic introduction of targeted next-generation sequencing (tNGS) in Eswatini and shows that tNGS...

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00:21:20

392: GWAS of Cocaine Self-Administration in Heterogeneous Stock Rats

Episode 392

June 12, 2026

392: GWAS of Cocaine Self-Administration in Heterogeneous Stock Rats

Lara MK et al et al., Nature Communications - Large GWAS in 836 outbred HS rats identifies six loci linked to cocaine self-administration traits,...

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00:23:23