Podcast Cover

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical...more

Hosted by

Latest Episodes

220: AML cell states reveal NPM1 immune-evasion subtypes

Episode 220

•

December 06, 2025

220: AML cell states reveal NPM1 immune-evasion subtypes

Lilljebjörn H et al., Nat Commun - Single-cell and bulk sequencing of 120 AML cases reveal two NPM1-mutated subtypes with distinct immune evasion mechanisms...

Play

00:15:48

219: Multi-omic mapping of lipid dysregulation in Parkinson’s brain

Episode 219

•

December 06, 2025

219: Multi-omic mapping of lipid dysregulation in Parkinson’s brain

Hällqvist J et al., Nature Communications - Targeted multi-region lipidomics with proteomic and mitochondrial data reveals region- and stage-specific lipid alterations in Parkinson’s disease...

Play

00:16:41

218: SIM1 and the multi-ancestry genomics of erectile dysfunction

Episode 218

•

December 04, 2025

218: SIM1 and the multi-ancestry genomics of erectile dysfunction

Bright U et al., Nat Commun - A large multi-ancestry GWAS meta-analysis identifies a dominant SIM1-linked locus and multiple genetic connections between electronic health...

Play

00:19:37

217: Multiscale triads of meiotic crossover patterning

Episode 217

•

December 03, 2025

217: Multiscale triads of meiotic crossover patterning

White MA et al., Nature Communications - FFT and inverse-FFT analysis of Zip3/Zip2, Hop1 and Zip1 on yeast pachytene chromosomes reveals two interdigitated tiers...

Play

00:17:47

216: 53BP1-RIF1 and DNA-PKcs: distinct interactions in chromosomal break repair

Episode 216

•

December 02, 2025

216: 53BP1-RIF1 and DNA-PKcs: distinct interactions in chromosomal break repair

Makins K et al., Nature Communications - This episode reviews a study showing that 53BP1-RIF1 and DNA-PKcs have different genetic relationships across blunt end...

Play

00:18:27

215: Protein Set Transformer for high-diversity viromics

Episode 215

•

December 01, 2025

215: Protein Set Transformer for high-diversity viromics

Martin et al., Nat Commun (2025) - Protein Set Transformer (PST) is a protein-based genome language model that represents genomes as sets of proteins...

Play

00:20:07